Package: sit 1.1.2.9015
Facundo Muñoz
sit: Analyse Mark-Release-Recapture Data from Sterile Insect Technique (SIT) Field Experiments
Import field data about the study design such as the location and types of adult and egg traps, the release events, the trap surveys and the egg hatches. Provide functions to compute and plot various parameters of interest concerning competitiveness of sterile males, dispersal behaviour, survival rates and density of the wild male population.
Authors:
sit_1.1.2.9015.tar.gz
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sit_1.1.2.9015.tgz(r-4.4-any)sit_1.1.2.9015.tgz(r-4.3-any)
sit_1.1.2.9015.tar.gz(r-4.5-noble)sit_1.1.2.9015.tar.gz(r-4.4-noble)
sit_1.1.2.9015.tgz(r-4.4-emscripten)sit_1.1.2.9015.tgz(r-4.3-emscripten)
sit.pdf |sit.html✨
sit/json (API)
NEWS
| # Install 'sit' in R: |
| install.packages('sit', repos = c('https://cirad-astre.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://forgemia.inra.fr/umr-astre/sit
- fake_adults - Fake SIT data for testing and examples
- fake_eggs - Fake SIT data for testing and examples
- fake_rareal - Fake SIT data for testing and examples
- fake_rpoints - Fake SIT data for testing and examples
- fake_trap_types - Fake SIT data for testing and examples
- fake_traps - Fake SIT data for testing and examples
- sit_prototype - A prototypical 'sit' object with fake data
Last updated 11 months agofrom:5565f8063e. Checks:OK: 3 NOTE: 4. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 29 2024 |
| R-4.5-win | NOTE | Sep 29 2024 |
| R-4.5-linux | NOTE | Sep 29 2024 |
| R-4.4-win | NOTE | Sep 29 2024 |
| R-4.4-mac | NOTE | Sep 29 2024 |
| R-4.3-win | OK | Sep 29 2024 |
| R-4.3-mac | OK | Sep 29 2024 |
Exports:dispersalfertility_rateflight_rangefried_indexinverse_radial_densitylincoln_indexprint_variable_tablesitsit_adult_surveyssit_competitivenesssit_diffusionsit_egg_surveyssit_flight_rangesit_mdtsit_reventssit_survivalsit_trap_typessit_trapssit_wild_sizesterile_wild_male_ratiosurvey_agessurvey_distances_from_releasevalidate_sit
Dependencies:backportscachemclassclassIntclicpp11DBIdmdplyre1071evaluatefansifastmapgenericsgluehighrigraphKernSmoothknitrlatticelifecyclemagrittrMASSMatrixmemoisepillarpkgconfigproxypurrrR6Rcpprlangs2sfstringistringrtibbletidyrtidyselectunitsutf8vctrswithrwkxfunyaml
Getting Started
Rendered fromsit.Rmdusingknitr::rmarkdownon Sep 29 2024.Last update: 2021-12-07
Started: 2021-12-01
Importing Data
Rendered fromimporting.Rmdusingknitr::rmarkdownon Sep 29 2024.Last update: 2021-12-05
Started: 2021-12-01
Retrieving Results
Rendered fromretrieving.Rmdusingknitr::rmarkdownon Sep 29 2024.Last update: 2022-08-30
Started: 2021-12-02
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Dispersal data | dispersal |
| Fake SIT data for testing and examples | fake_adults fake_eggs fake_rareal fake_rpoints fake_sit fake_traps fake_trap_types |
| Fertility rate | fertility_rate |
| Fried index | fried_index |
| Inverse radial density weights | inverse_radial_density |
| Lincoln index | lincoln_index |
| Build a 'sit' object | sit |
| Import or retrieve adult surveys | sit_adult_surveys sit_adult_surveys.data.frame sit_adult_surveys.sit |
| Estimate competitiveness of sterile males | sit_competitiveness |
| Diffusion | sit_diffusion |
| Import or retrieve egg surveys | sit_egg_surveys sit_egg_surveys.data.frame sit_egg_surveys.sit |
| Flight Range | sit_flight_range |
| Mean Distance Travelled and Mean Dispersal Distance | sit_mdt |
| A prototypical 'sit' object with fake data | sit_prototype |
| Import or extract release events | c.sit_revents sit_revents sit_revents.data.frame sit_revents.sf sit_revents.sit |
| Survival statistics | sit_survival |
| Import or extract trap types | sit_trap_types sit_trap_types.data.frame sit_trap_types.sit |
| Import or extract trap information | c.sit_traps sit_traps sit_traps.character sit_traps.numeric sit_traps.sf sit_traps.sit |
| Size of the Wild Population | sit_wild_size |
| Sterile-Wild male ratio | sterile_wild_male_ratio |
| Age of captured sterile males | survey_ages |
